Bioconductor for Genomic Data Science
- Methode
Bioconductor for Genomic Data Science
Bewertung:
Beschreibung
When you enroll for courses through Coursera you get to choose for a paid plan or for a free plan .
- Free plan: No certicification and/or audit only. You will have access to all course materials except graded items.
- Paid plan: Commit to earning a Certificate—it's a trusted, shareable way to showcase your new skills.
About this course: Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Created by: Johns Hopkins University-
Taught by: Kasper Daniel Hansen, PhD, Assistant Professor, Biostatistics and Genetic Medicine
Bloomberg School of Public Health
Each course is like an interactive textbook, f…
Frequently asked questions
Es wurden noch keine FAQ hinterlegt. Falls Sie Fragen haben oder Unterstützung benötigen, kontaktieren Sie unseren Kundenservice. Wir helfen gerne weiter!
When you enroll for courses through Coursera you get to choose for a paid plan or for a free plan .
- Free plan: No certicification and/or audit only. You will have access to all course materials except graded items.
- Paid plan: Commit to earning a Certificate—it's a trusted, shareable way to showcase your new skills.
About this course: Learn to use tools from the Bioconductor project to perform analysis of genomic data. This is the fifth course in the Genomic Big Data Specialization from Johns Hopkins University.
Created by: Johns Hopkins University-
Taught by: Kasper Daniel Hansen, PhD, Assistant Professor, Biostatistics and Genetic Medicine
Bloomberg School of Public Health
Each course is like an interactive textbook, featuring pre-recorded videos, quizzes and projects.
Help from your peersConnect with thousands of other learners and debate ideas, discuss course material, and get help mastering concepts.
CertificatesEarn official recognition for your work, and share your success with friends, colleagues, and employers.
Johns Hopkins University The mission of The Johns Hopkins University is to educate its students and cultivate their capacity for life-long learning, to foster independent and original research, and to bring the benefits of discovery to the world.Syllabus
WEEK 1
Week One
The class will cover how to install and use Bioconductor software. We will discuss common data structures, including ExpressionSets, SummarizedExperiment and GRanges used across several types of analyses.
16 videos, 3 readings expand
- Reading: Welcome
- Reading: Syllabus
- Reading: Pre Course Survey
- Video: Installing R on Windows
- Video: Installing R on A Mac
- Video: Installing R Studio on a Mac
- Video: What is Bioconductor
- Video: Installing Bioconductor
- Video: The Bioconductor Website
- Video: Useful Online Resources
- Video: R Base Types
- Video: GRanges - Overview
- Video: IRanges - Basic Usage
- Video: GenomicRanges - GRanges
- Video: GenomicRanges - Basic GRanges Usage
- Video: GenomicRanges - seqinfo
- Video: AnnotationHub
- Video: Usecase: AnnotationHub and GRanges, part 1
- Video: Usecase: AnnotationHub and GRanges, part 2
Graded: Quiz 1
WEEK 2
Week Two
In this week we will learn how to represent and compute on biological sequences, both at the whole-genome level and at the level of millions of short reads.
8 videos expand
- Video: Biostrings
- Video: BSgenome
- Video: Biostrings - Matching
- Video: BSgenome - Views
- Video: GenomicRanges - Rle
- Video: GenomicRanges - Lists
- Video: GenomicFeatures
- Video: rtracklayer - Data Import
Graded: Quiz 2
WEEK 3
Week Three
In this week we will cover Basic Data Types, ExpressionSet, biomaRt, and R S4.
9 videos expand
- Video: Basic Data Types
- Video: Annotation Overview
- Video: ExpressionSet Overview
- Video: ExpressionSet
- Video: SummarizedExperiment
- Video: GEOquery
- Video: biomaRt
- Video: R S4 Classes
- Video: R S4 Methods
Graded: Quiz 3
WEEK 4
Week Four
In this week, we will cover Getting data in Bioconductor, Rsamtools, oligo, limma, and minfi
7 videos, 1 reading expand
- Video: Getting data into Bioconductor
- Video: Short Read
- Video: Rsamtools
- Video: oligo
- Video: limma
- Video: minfi
- Video: Count-based RNA-seq analysis
- Reading: Post Course Survey
Graded: Quiz 4
Werden Sie über neue Bewertungen benachrichtigt
Schreiben Sie eine Bewertung
Haben Sie Erfahrung mit diesem Kurs? Schreiben Sie jetzt eine Bewertung und helfen Sie Anderen dabei die richtige Weiterbildung zu wählen. Als Dankeschön spenden wir € 1,00 an Stiftung Edukans.Es wurden noch keine FAQ hinterlegt. Falls Sie Fragen haben oder Unterstützung benötigen, kontaktieren Sie unseren Kundenservice. Wir helfen gerne weiter!